Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PCPG rs6436881 chr2:230490251 G/A 1.16E-8 173 5.18 24.62 25.87 KM Plot
PCPG rs6437265 chr2:242524587 C/T 0.00011 178 25.87 27.62 20.28 KM Plot
PCPG rs6437266 chr2:242526914 T/C 4.33E-5 177 25.87 27.62 20.2 KM Plot
PCPG rs6437269 chr2:242542298 T/C 4.16E-5 177 25.87 27.27 20.2 KM Plot
PCPG rs644305 chr8:104009880 G/A 2.65E-7 176 26.27 19.3 4.03 KM Plot
PCPG rs645686 chr17:36993655 T/C 4.32E-6 174 25.17 36.33 24.62 KM Plot
PCPG rs6469931 chr8:121497027 C/T 4.11E-6 178 27.23 25 19.87 KM Plot
PCPG rs6472772 chr8:74329009 C/T 0.000192 170 43.47 27.2 24.7 KM Plot
PCPG rs647421 chr13:37499832 G/A 0.000473 173 6.37 24.47 25.47 KM Plot
PCPG rs647747 chr16:89603064 A/G 0.000194 176 29.57 25.4 19.53 KM Plot
PCPG rs6500424 chr16:89581589 G/C 0.0004 176 26.78 25.67 19.2 KM Plot
PCPG rs6511040 chr19:19671121 C/T 0.00036 178 25.42 27.23 20.25 KM Plot
PCPG rs6533413 chr4:78954370 G/C 0 175 2.93 25.43 25.47 KM Plot
PCPG rs6533416 chr4:78967611 C/A 0 177 2.93 25.43 25.28 KM Plot
PCPG rs6533417 chr4:78969118 A/G 0 173 2.93 25.43 24.93 KM Plot